CV - Computer Science and Engineering - Michigan State University
Ph.D. Computer Science, University of Texas at Austin, 2004–2011. Dissertation: Fast and Accurate Estimation of Large-Scale Phylogenetic Alignments ... and Bioinformatics and Computer Sciences Department, Summer 2011. .... Z. Wang and K. Liu, “A performance study of the impact of recombination on species tree anal-.
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here - Rice University Department of Computer Science
Ph.D., Computer Sciences, University of Texas at Austin. (Advisor: Tandy ..... In Estimating Species Trees: Practical and Theoretical Aspects, L.L.. Knowles and ...
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bioinformatics original paper - Department of Computer Science
Jul 9, 2013 ... Department of Computer Science, The University of Texas at Austin, Austin, TX ... estimate species trees in the presence of ILS, beginning with.
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Md. Shamsuzzoha Bayzid - Department of Computer Science
Department of Computer Science. University of Texas at Austin. Texas. Cell: 512- 925-3107. USA ... “Species tree estimation from gene trees”. List of selected ...
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Siavash Mirarab - Electrical and Computer Engineering
Department of Computer Science. Ph.D. January ... University of Texas at Austin, Computer Science, Bert Kay Dissertation Award, 2015. University of Texas at ... and other coalescent-based species tree estimation methods. BMC Genomics,.
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Professor, Department of Computer Science, University of Texas at Austin ( .... puter science and discrete algorithms for improving the estimation of large species ...
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Large-scale multiple sequence alignment and phylogeny estimation
1 Department of Computer Science, University of Texas at Austin, Austin, .... * BEAST, which co-estimates the gene trees and species tree directly from the.
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Weighted Statistical Binning: enabling statistically consistent
1 Department of Computer Science, University of Texas at Austin, Austin, ... for estimating species trees from multiple loci can be positively misleading in the ...
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Algorithms for MDC-Based Multi-locus Phylogeny Inference - Springer
Volume 6577 of the series Lecture Notes in Computer Science pp 531-545 ... Exact algorithms for inferring the species tree from rooted, binary trees under MDC ... Nevertheless, in phylogenetic analyses of biological data sets, estimated .... Dept. of Computer Sciences, University of Texas at Austin, Austin, TX, 78712, USA ...
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INFERRING OPTIMAL SPECIES TREES UNDER GENE
Department of Computer Science, The University of Texas at Austin, ... techniques for estimating species trees in the presence of gene duplication and loss.
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Reconstructing Reticulate Evolution in Species – Theory and Practice
Department of Computer Sciences. University of Texas at Austin. Austin, Texas 78712 ..... 4 Reconstructing gt-Networks When Gene Tree Estimates are Accurate .
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A comparative study of SVDquartets and other coalescent - bioRxiv
Jul 20, 2015 ... 2Department of Computer ... Methods for estimating species trees in the presence of ILS have been ...... 5Department of Computer Science, University of Texas at. Austin, 2317 Speedway, Stop D9500, 78712 Austin, TX, USA.
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Seasonal variation in colony size of Brazilian - Boston University
Department of Computer Science, Boston University, Boston, MA 02215, USA .... estimates of colony size for this species were inflated. ...... Texas Press, Austin.
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Download PDF - faircloth-lab
Jan 7, 2015 ... 12Bioinformatics Group, Department of Computer Science, and .... 2Department of Computer Science, The University of Texas at Austin, Austin, TX 78712, USA. 3Scientific .... for estimating species trees from genome-scale.
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Session introduction - Stanford University
Department of Computer Science, University of Texas, Austin, Texas, USA. Advances ... the STAR approach (for Species Tree estimation using Average Ranks).
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Phylogenomic species tree estimation in the presence of incomplete
2Department of Computer. Science, University of Illinois at. Urbana-Champaign, 201 North. Goodwin Avenue, 61801 Urbana,. IL, USA. 3Department of ...
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A Unified Framework for High-Dimensional Analysis of M-Estimators
Ravikumar is Assistant Professor, Department of Computer. Science, University of Texas, Austin, Texas 78712, USA. (e-mail:[email protected]). Martin J. Wainwright .... tion to different types of matrix estimation problems, among them ...
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A Line in the Sand: A Wireless Sensor Network - Computer Science
2 Department of Computer Sciences, The University of Texas at Austin ... coherent sensor arrays that perform in situ detection, estimation, .... magnetometers based on matching magnetic signatures produced by different types of vehicles.
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Decision-Theoretic Bidding Based on Learned Density Models in
Dept. of Computer Sciences, The University of Texas at Austin. 1 University Station ... This can be viewed as a conditional density estimation problem, that is, a ...
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Distance-Based Genome Rearrangement Phylogeny
2 Department of Computer Sciences, University of Texas at Austin, Austin, TX 78712, USA. 3 Department of Computer ... of vascular plants (Raubeson and Jansen 1992) and ... of trees estimated using distance-based methods. (Sourdis and ...
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